Scaffold Ga0209972_10000742

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000742
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32066
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (6.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025465	Metagenome	201	Y
F039051	Metagenome / Metatranscriptome	164	Y
F058003	Metagenome / Metatranscriptome	135	Y
F088280	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000074217	F088280	N/A	MKSLFMNCPECDGSGYVTIDLNDTHIPYEQNPVDFTCMSCDGKGIAIDKEEAEDRIYRVDDMIEGMQTRMRMLSDFIKTSRKGYLPNLEKKYNDRLETCARGLGRLMNYKRKLHNLVS
Ga0209972_1000074232	F025465	N/A	MDELTIITGKVNLDTTYLKIKLSLEEIKERASNRHDLIHSMERSLVDLQQVKISYDAIEKELRAALQQNFRLEKLLQEEKFKVKDLEMELKLKDVDL
Ga0209972_1000074244	F058003	N/A	MAKKNLNVKVDTENIDVNVERKDGDLKVNYDSKKLDVEVNKTADNVEVKVDAQGGLLKLVGKVLKKVLLRRIK
Ga0209972_1000074246	F039051	N/A	MINIEQILTVIKKQGATGVLAMWLWYTHSDVQDLKHRLYDCYGKANNSATREVPDNNNFAVVPKDELIEIE