Scaffold Ga0209972_10000692

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000692
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33238
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (20.37%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007798	Metagenome / Metatranscriptome	344	Y
F009604	Metagenome / Metatranscriptome	315	Y
F019824	Metagenome / Metatranscriptome	227	Y
F020882	Metagenome / Metatranscriptome	221	Y
F021983	Metagenome / Metatranscriptome	216	Y
F023346	Metagenome / Metatranscriptome	210	Y
F031493	Metagenome / Metatranscriptome	182	Y
F039627	Metagenome / Metatranscriptome	163	N
F079812	Metagenome / Metatranscriptome	115	N
F084133	Metagenome / Metatranscriptome	112	Y
F091907	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000069210	F031493	GGAG	MRNFAKDGPPKYRKPEPLHKNWHYIGDGRFHDPSLGSEPMRGRRWMIDPSASSGKSFDKFQQGLKND
Ga0209972_1000069213	F021983	N/A	MEEWPTINAGNLQAMMVMRQQSAPAPASNGFDPYQAMLRRKQSNIQDETGYINTPTQEYDPKDIQELEEFCTKYGIVGFNFGTMNPKSALRMLKGRMGVREEKITPKTMLFG
Ga0209972_1000069214	F084133	GGA	MFNNKIQGMNQSPNVNFGLKDTQPVQCTDCKGEVFQNGVIFRKVSKILAGTDKDALVPITIPYCVNCMAPLEELLPSELKQPKFSLEK
Ga0209972_1000069241	F023346	N/A	MNKISKNIILTYAKGIRTIQSEQIDPYLKLIEDELIKVYPELKDRDDNALNWTFDIMNAESNAEVVETLERLNKIINDERVSKWTCNYCGKNTYNDDVEYLFGTNHISCALTEDIKNRSHSDPDYNLNPELRKISDLENELRHTKRELQNLELKLEHLRRDYHHEPTN
Ga0209972_1000069242	F009604	N/A	MIKCGCGNEIHPERYELGYKICLSCGEQSAAKQRPYGYLHFGHKTAGSIVITSKKAFENYSKVSYRKGKASNMAYASRLSTSF
Ga0209972_1000069243	F039627	N/A	MTATFYKTVYQRKFDELPRWKQLAIVEDSGRNHWSGILTDFIKSVIEEAEKEYANSKTRNEIAPLEPTPETSVKDKKITKKKS
Ga0209972_1000069245	F079812	N/A	MSTKYVMDNNNRNIGYTKDMGSVIYAHDKTGKNVGYYNPTSNTTFDRNGKRYGNGNLTESLVFEASKSSK
Ga0209972_1000069246	F091907	N/A	MNTSKTGRKAITVVEITDRNFTIVDLSNLNSTVKTPTLRMHVKRNLANGRYTVAGSQKTGKRGKPSTVYTYNTTETKAVSA
Ga0209972_1000069249	F007798	N/A	MKDTTLKQLVRDRDGQPRGMVVATVIDGTVRLGWSHTNTKAGDRFDKRKALTIALGRAENGWGPTTVVPVSTRKVLNKMAERAVRYYKNVPVTLT
Ga0209972_1000069250	F019824	N/A	MDRYINNNFFGSVDDLLNHCTHLDVDKIEQQVKAEEKEECIRVIMKELECNEFEAGVIYNEIALVEVKETVDKMVADGLLYMSGHTEDGEPLFSLTELGKAVRDKMNKDK
Ga0209972_100006929	F020882	N/A	MSKLQENELGDRMMLGTPYAQGGAVSGASDVSTFTSPDVAQDPNHFGTLIDKSKITAGAKDSMSKIAPFGPYTGQNPQDYVKDVEQIKYKVTPDEIIAGIDYEMKKLVLKDKQVAKQNVVNNLKKDRQYYSKLHMLDIKDDEPTKQEDYRTPQEKAIAEIMRDLHEKKQQRRNWS