Scaffold Ga0209972_10000593

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000593
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35938
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (21.05%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034921	Metagenome / Metatranscriptome	173	Y
F043930	Metagenome	155	N
F044319	Metagenome / Metatranscriptome	154	N
F047570	Metagenome / Metatranscriptome	149	N
F056374	Metagenome / Metatranscriptome	137	N
F059905	Metagenome	133	N
F093350	Metagenome / Metatranscriptome	106	Y
F104500	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000059314	F093350	N/A	MTETILTKDQLFDINEFIYQNGHESLWRVGDKLEKVLGEIAICPEKDKKISKFLSKHGTKTVHALNDSIFTLVKDLLKKEEMVELQPA
Ga0209972_1000059331	F044319	N/A	MKIIDLIASQAGLARFASFTYCSRSTGEVARYTLQLGFSYRNILQKSIMELEVDKQIMTDLPRQAAEEILASLNASLAGTQTKYTKKDIYEDYKVDGKTVQGIKVNKNDGSLKIFGLITSKVQITPPVTPYKEVKSAPLTIEKNKITKTLPIGRFREFALDNLAMAKLNGETLVLE
Ga0209972_1000059343	F047570	N/A	MKMTNDNKLKIVTLSHNIKALCYMLDKKTLSEHCFISGTFTEIDSLFELAKELKEMNKEE
Ga0209972_1000059359	F034921	N/A	MSYIGVPEQYQVNFHNQVSEAQKGFSDYLCPTTKESYWATVDYYWPQIKNIVLMFSYLDENELDKWVKERNPEIAIVFNDAWFNAPDSGRIHLIPAWHIFCDLCSEGYLLHEN
Ga0209972_1000059361	F043930	GAG	MNRLEKARWRNILRKAAKANRLLKKGYLVFDHYGNRFDGFKFSNGELYQGSKTCKIMWASKDKRWGSALDTSIKKYNSDRFNKWTAVHPKHIKKI
Ga0209972_1000059362	F104500	N/A	MTTKVITVADIIKFLQTIPPETKVRVKEEISRNWETSTAYTNVVQFGDGEFNIDFVDGITYWKEGKTIDFGK
Ga0209972_1000059382	F056374	N/A	MKARKTIEIEKIKERANHYLANSWNIHDKERKGCAGLVTTLLMDAGAYKGFTYLRKEDVAPLLTFGVEWVDGKPVHHDESRIHFF
Ga0209972_1000059386	F059905	N/A	MKNDCKNALRHLTTKTFEVFAEFTNAVSVLSLPGENWEFENFVLNYQDYRNCIQQIPLDLQLVCFEKSFRIYSLNTLFDRNKDNKTKYINDKLNLDHLKLLNNNNKFFWFDFCGNPSVECLRFLNNVFADGDRVCAIFTFTLGWRIKDNLPIELNQMAKETSNQEAIETYFKNALNEMNSKIEDISNKINLLWKYTYISSRAPMICLCITNDLILKRKISLRGQGELQKPDQEVTPAAEVKGDLGAGEELVQQMKASRQSLAAHKAWVTRRANAAKAALAGAGTALENK