NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10000517

Scaffold Ga0209972_10000517


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10000517 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37955
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (72.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001848Metagenome / Metatranscriptome626Y
F002037Metagenome / Metatranscriptome600Y
F006019Metagenome / Metatranscriptome383Y
F012116Metagenome283Y
F019123Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000051710F001848N/AMILHYIPKDQLRSHWNFIKHGLEIVRSKGHPEWIVEDVYCDCYEQRSMAFLAITNNQPYGFVVLQPMGNALHVWAAWSSINSELLLQEAWQEIQAIAKQGSKTRITFTSQRRGWDRKALHMGFKPSTWEYTL
Ga0209972_1000051717F006019N/AMTFITENNIANLYDTLIQFPVFDEYKLPPASKVDFVVVHDDTICGQYEPPEQGEPHVITISTAKCGHLDTVIKTICHEIIHMICYLEAPKTEKYTSHKGLFLKLQKRVANTLGYDPKEL
Ga0209972_1000051722F002037AGGAGMNKIYWIFIVVIAALAIWGTEKALAQTTTILAPDGSVTVCQVGSNGIVVCV
Ga0209972_1000051726F019123GGAGGMVDSKPLTQEEIIKIYKEAFGKGDQLVTIDRIFRFARLLEQTHGIKDVH
Ga0209972_1000051727F012116N/AMKDKILGYLVEEFDNTGKLVWSAFMSSKPTSLEIEKDIKNKLHNWVITPLIADTKNIIKVTNTKKYDSKRLTEAHGGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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