Scaffold Ga0209972_10000514

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000514
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38029
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (24.19%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F006260	Metagenome / Metatranscriptome	377	Y
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F020529	Metagenome / Metatranscriptome	223	Y
F024047	Metagenome / Metatranscriptome	207	N
F038668	Metagenome / Metatranscriptome	165	N
F041152	Metagenome / Metatranscriptome	160	N
F042296	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000051413	F020529	N/A	MINNKNIIKYCAKYFVVLTVGAYVFNLCTNLINQKSDVANLLGTALFAGLFIGSLLILRSDVTKLVKNIKSENKENE
Ga0209972_1000051415	F041152	GAG	MNIVNYIVTNWDNLPKSKFDDVTVVIFKELQNWDEGYGHHTYEGYGVDKDGNVTWCYSSGCSCGGGPDTEIKKDLKTFTVDSGIDLNVDPSTINFKSLEVEFTTY
Ga0209972_1000051417	F006018	N/A	MKKYKIKTNDIGMCMSVGCDFYQTCTNNSVNMFYRTKHKFEPMLDEGVCLSYSSGKNTKDYSDNCYPNTLKKIYVN
Ga0209972_1000051421	F006260	N/A	MEKELTIKDRVKNPIVIQHDDLKFDGKTITIPSYYINSICDYIKDWKLDGEKQVDIEDYVIFRNFLYDVQEYKNKGN
Ga0209972_1000051423	F024047	GGA	MSIVNKNEVVEWLKNVVEKKMVKELNVPNAKVYFSCDRPHPDVILETKNKDGDLQIVRFLII
Ga0209972_1000051425	F009135	N/A	MKSPSYYLQVNLPPNFDEVDAEMIKKDLMTYIISRNQYGAMYGPKSSKKGITINKVLYRTNED
Ga0209972_1000051426	F013524	N/A	MKTNNEVVSRLREFTNNNCNTTLDPKLCEDIRYLCDEVERYSREVVKANNFMDEDHITIQRYKKKLENCQTKLSNYEPF
Ga0209972_1000051427	F042296	N/A	MNLFKSVIKWSGIGLFACFAYAATLPEPIKLYVIYTYKFNERVIEKIFIKKDNAQKYCEQFKDNHDYTFEEITVKE
Ga0209972_1000051429	F007859	N/A	MKKLLIIALLSTGCTSGMYLRYNYNKALETLPPCSQVHIINNRYITYSLVESSTNNVYTSHTNYYRAYYNVDGKIIKTIKY
Ga0209972_1000051430	F010081	N/A	MNEQIDSIIKKHCFKMQELDQNKSIPMVVKQLDRIVYEMYRELYGLRDIRSNNYYLNSFTADDKKGHCC
Ga0209972_1000051454	F038668	N/A	MNSKISLYELLKRVVDKERIKKAYKFFINKLNLPSDKIQLKFGLLEREVQAKVKVEGEGKPFIVKKYTVIMRTNDPYSSDDQIRSLAHEMWHIKQVEDGKLNTFDNSWENVVYPNYDDTDLRYKSLPWEIDARINSDQLLLAYNRYAREKGAGSKIIKIK