Scaffold Ga0209972_10000458

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000458
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39629
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (90.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F022860	Metagenome / Metatranscriptome	212	Y
F027495	Metagenome	194	Y
F046342	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000045837	F046342	AGG	MSVGLTEVQHCPWSLVAIHWTDAFDSQNGWVDVNEYHPKATHVVSVGYLYPEALEGYVSITGSYMPDELPDMETIGMVTHIPNGMINKIVVLDQPNWVAT
Ga0209972_1000045843	F003378	AGAAGG	MTFMKAANKAVALTLDIGQRLFSLFVATALPAITGGAVIGVSVVKSALIAGFMAVAGVLQKLAAASTDGELTREEIAEAFKK
Ga0209972_1000045844	F022860	AGTAGG	MWNYIKEQTWTLAGVGLVLITLSGPTLRQALWLTGVALVLHSILTATTGEKD
Ga0209972_100004586	F027495	AGG	MKHRETHPNLDVEGCFACRIAHVGVSGAATPTRGNVRDMNLKERRLDKDLDAYKRIRQSGGQPTQIDGSARLEKTAD