NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10000390

Scaffold Ga0209972_10000390


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10000390 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42515
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (85.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020883Metagenome221Y
F029734Metagenome / Metatranscriptome187N
F060854Metagenome / Metatranscriptome132N
F095175Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000039031F029734AGGAMRKVATETLNGVVKNGTVHISKADDKRVFAKVRITTPTAKSSKKIEAILKAMGQYPNFDKVLAAVLKVEPNAYVTLKGGAR
Ga0209972_1000039038F020883AGGAGMEPSFRIAQVETLLTSYTDAVHRSGMGDLAIWQSLDSIYTRPDNYELVLTSTREEAFDRMVKDNWHVYMGDHFFGIDYETVDEEVLKYLVDNQLVTRVDES
Ga0209972_1000039044F060854AGGAGMSRPRPTEIKLVANLLDPDNTNSESAAELAVEIIEALDESRGKRDAYVLVGQLARWAPVQAWGEFSTKLQAEKFVKNLSAVDKNEPGKAVVCRLELPEKFLERIGGK
Ga0209972_1000039052F095175GAGGMTTIIGIQEPDGCLIAADSRTTTEKGRPYSHPIVTKITKRGKFLIAGAGTTQPCDIVQHIWKPPAIPANTKDIYHFMITTVIPNMRECLRDNGFIHDEKTDEYEFLFLMAVNGTIYEVDDTYSVFLRDDGIYGLGSGSSYAIGALASGANWKKALQIAAKNDVYTAPPFVVHRQEKK
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Institute for Fundamental Biomedical Research
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