Scaffold Ga0209972_10000230

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000230
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55900
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (20.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010082	Metagenome	308	Y
F028540	Metagenome / Metatranscriptome	191	Y
F032654	Metagenome / Metatranscriptome	179	Y
F062693	Metagenome	130	Y
F065704	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000023016	F028540	N/A	MNPVVEAWIVIEKLGALVATPGVSEAVKESANEQIRKLLDDVVAPSLTELAAKRAGLLIK
Ga0209972_100002302	F010082	N/A	MLSPRLTNCIECNTITALLAEIDCKVAELAKNEYNNVVFALNYPLPGTVLDDLLNYKRILRFKYCNGSYGAPFTLNQIASRVKVLIHK
Ga0209972_1000023039	F065704	AGAAG	MGANWFRTYGMGNSVRDAYNSAVEDANYEHGHQEGYSGEINSSAGFRDVTREFKASGKSLNEYIDGQQDKLTKHQGAQAICIQEPKSNTNKIKTQVEHIVTPGTKKWVLMYVVYCSEDRVMSAPTKGEAVKLAREYSEKHQCTTMIRMERVLEKKDHALVAKVTYKRASDEREGKWLFFGWAAY
Ga0209972_1000023071	F062693	N/A	MKSKIILDIEEDELNLFNKQYLSLPELHEEIESLFEQGEKLDKRKKKQVSEWKEKINFLIDMYNTKSKFKTYNKVK
Ga0209972_1000023073	F032654	N/A	MKNQFFYTRKELKSGTPENPVYNEFRDSFNMEKVVRSLTIEDGRVLILLDDLHERAQEVPDVDPRTNKVKGMKRQKNTFQSEIYLEPEDAQRFFELTSIG