Scaffold Ga0209972_10000178

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000178
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63493
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (85.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001715	Metagenome / Metatranscriptome	647	Y
F002370	Metagenome / Metatranscriptome	566	Y
F010158	Metagenome	307	Y
F011385	Metagenome / Metatranscriptome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000017827	F011385	AGGAG	MTAYFFIGYTVGIVLGYVIWAPETRFKKNFVDGMTLRFLWRKK
Ga0209972_1000017844	F001715	N/A	MITLIPPIEENIPLPSNAAEAMPRLTPTEELNMRANVVKLMSDLTGQPLSPTQSNIEEATALAQQMAKDPQLRPNFTNYPNETLAYLAGMVAQMNQSIVHDLAELKMYVVNKLVAEIEHAKDPKIRVAALSKLGEVDGVDAFKRRTESTIKVQTLEEVERELARTLESLENKIIDVEANEIVRSEPEIDE
Ga0209972_100001785	F010158	AGGAG	MDPQQMLEPEWIFPFQGMAVGDSFFIPTARVAEMMYAIESGAKRAQVRVKAYPTIKDECLGVRVWRVR
Ga0209972_1000017873	F002370	GAGG	MKDMSAKTAVHKHEKAMHPGKPMTKLAKGGVTSVNMKKYGRNLARAMNQKKSSFTYKKGA