Scaffold Ga0209972_10000089

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000089
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84117
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (11.63%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F006840	Metagenome / Metatranscriptome	363	Y
F012010	Metagenome / Metatranscriptome	284	Y
F048248	Metagenome / Metatranscriptome	148	Y
F064715	Metagenome / Metatranscriptome	128	Y
F074450	Metagenome / Metatranscriptome	119	Y
F076942	Metagenome / Metatranscriptome	117	Y
F083779	Metagenome / Metatranscriptome	112	Y
F091487	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000008919	F083779	N/A	MAKMIFGKEETRNLLMMLQSEDADNHTIAFESLKNVDFNKYIGELLVLYKFGGHSIGNWNTNCKNLTAKLAKIVDQTPLSSPKTLSLITQHKGSKASVELFMEFFIRDMSRMLESIGYPTDKFEINIKFKDDGQTTES
Ga0209972_1000008929	F012010	N/A	MDEIFKRLMDENISPNTYYVLHCIKEKIVPSTLVNKEIESKRLQSNAWLDENLQLTSKSIIFMEEINGYFKRTKKKAAKDLMGKDFLLNIKEYVEIFPNRKLSSGKYARVNPKNLEAPFKWFFETYDYSWDIILQATNKYVNEYEVRDYEFMRTAQYFIRKQNIDKSFESDLATYCELVINNPDDEIVYFKERIL
Ga0209972_1000008945	F074450	N/A	MEEYTKDDVLQALLKIPNKSRHRVLVDQRSYLVAILAYRFLLTENTIAGLTGFKRDKVNYNKKLALQLHADKSYMQNVYVYAQMFPFDFSVIEPNEIGSHRSKRIELDLDRKFYNKLKAIGNIKGHDDIRTTIKLFLEKSIKIWEE
Ga0209972_1000008949	F064715	N/A	MNEADKKQIKDVADKSEDVGNTLYDEYKKNKKLETAKVSIAAFRNTLYANSLLIKAEKL
Ga0209972_1000008952	F000716	N/A	MEKLKQNVRDYQLSAGKMYMQYEVDGYSQYQNYLYKRALYGLDALTEQELSAMCSKKKQRIINVYKRAQSVLNIEKQKITIHYTNVLFKTFFPKSDLTKELESLNETDEKFKNTLTFKDLKIDKNQIVSIFIAEGILPKNFLSLEGSPSQLPRLKHEVKSL
Ga0209972_1000008953	F076942	N/A	MDSKVIVLADQATKAVINISENRTEYGYVKLQQIRNVIDDNGFLRRKPVNALLPALVEDLKAMNLSEGQALTGKIVIEESLEPFNAKTPERDLKIAGSTGIVCTWNGLPIYRRTKFTFDVNAEDTYIKHDNVQELRAAYSAQKANTSGIENARPTEDFNI
Ga0209972_1000008955	F048248	AGAAG	MRISVNYDDTDVAKALSKIIKDSNSEEFVKLFTPMICNSSQTCDHFFKLMLGNKLPDIIPNGTLCKMHYSNLGYGVDKEATRDNFADQDENITVVIKEFRGYHEYSSYTVECMVITAAGLTRLDTTYVQAKDLEVIEEF
Ga0209972_1000008975	F006840	N/A	MKPFKQLRGRTILLSVPERKKSGLELSAKDEQAIMQEAAKLWSRLSVYAIGDKVEDVSVGDEVYVRTSALNMETVERIDIDGEIKLVLNEGDVIIVW
Ga0209972_100000899	F091487	N/A	MHPVTFRKAMIEAYLAGAEAMASGDIDEPNKKDARDWFDNEYGQQESEECDCCEEE