Scaffold Ga0209972

Basic Information
Taxon OID	3300027793 Open in IMG/M
Scaffold ID	Ga0209972_10000078 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209972_10000078 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	88598
Total Scaffold Genes	99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (19.19%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

88598

Total Scaffold Genes

99 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (19.19%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location Name	USA: Ohio, Lake Erie
Coordinates	Lat. (^o)	41.69957	Long. (^o)	-83.2941	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio, Lake Erie

Coordinates

Lat. (^o)

41.69957

Long. (^o)

-83.2941

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016527	Metagenome / Metatranscriptome	246	N
F016969	Metagenome / Metatranscriptome	243	Y
F021517	Metagenome / Metatranscriptome	218	Y
F028808	Metagenome / Metatranscriptome	190	N
F041771	Metagenome	159	N
F093866	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_1000007822	F021517	N/A	MKLKHLLENSTEHAYTPLTVYEKKNMVETIKAYNQYRKGLKAEGVYATAQKIMEAVNLAERYALKECGDWMEAKMVERDMKEIKRDAAKMYEEAQKMKSIEKQLEMLYEEVGRRLERYFEIADITPTTDTKSLTDSSELNQ
Ga0209972_1000007851	F041771	N/A	MKIEVLKEFIKKTVQQEVRSVIQSELKLQLTEIFSKEVGQKKKKSSDSDLEQQILKELETMNESSMIEEEVKPVKKFVKYTNNPLLNDILNQTTGGVPQEGGMVSMLGGYGGGGSQEVIAETKVPENASEPVKSVYTALNRDYRSLMKAVSKKKGEK
Ga0209972_1000007869	F016969	N/A	MSNIKLTKSEAEKKVYQLTEDLLHVKKDFKDVAAGYKERMKEIESEIKAIVEEASIGDPTKIN
Ga0209972_1000007870	F028808	N/A	MKKYSLLYEASSIYDYLIWEPTGRLQYIADELDKFSSDSSKLYRGMSEAEYNILNTTGKVTSRGTGNTRNIIGSYLSSDFKLAARFALVNFRNKNNGIIVTVDKSKLPDLKSVDPGNYVTTYIPKEAVTQVLNLKTL
Ga0209972_1000007883	F016527	AGGA	MKKVLVLLSLLTSLAVIAGENANISVETGYNNQYTVNGVARAEDAAFVSVGAVKSLKYADVYLGGTLLPTGDSDQSHWTLGVGKEVEVWKDVFSARADATVTRHQAGGFGIPNSTEFGVKLALPNKLITPYVRGSFDIDLDQEGVFVGVERAQKLPLGFVITPAVEYGRVFGTTSDYTAVNAKATLSRPFECSFGVVTPFASVGWYDNNFDVSKYNWATREFSGDLVYTGGLKFTF
Ga0209972_1000007884	F093866	N/A	MNNLTKIDMANLVVDESKKTEIRHILCDKYGANDVQYHDLSYGICIDVVGTDSFRFIKNAIIKTLGVHEDTLSVLSENKKSLKASYVYLPEKDKVLIKRLKKSKI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209972_10000078

Overview

Ecosystem & Geography

Associated Families

Sequences