Scaffold Ga0209972_10000046

Overview

Basic Information

• Taxon OID: 3300027793
• Scaffold ID: Ga0209972_10000046
• Source Dataset Name: Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115174
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (19.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location

• Location Name: USA: Ohio, Lake Erie
• Coordinates
  • Lat. (^o): 41.69957
  • Long. (^o): -83.2941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002332	Metagenome / Metatranscriptome	569	Y
F014972	Metagenome / Metatranscriptome	258	Y
F032249	Metagenome / Metatranscriptome	180	Y
F056551	Metagenome / Metatranscriptome	137	Y
F073459	Metagenome / Metatranscriptome	120	Y
F078626	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209972_10000046114	F002332	AGGA	MALVNQVQKRVMMPKWDIVKYQILTHCYINRITVSNSDLDCLTLLSFNQPTELTHFCYDASAEEDWIFKTPQTVRNCINKAEKNNLILKDPNNKKIIMLNPELKVQTEGTILLDFKFLANDTQETKGDN
Ga0209972_1000004616	F032249	AGAAGG	MGKFMLLIGKDATEIFDYYSVDKMHGLNRKDAQAEEVDKSKGNGVYIYGWTNYDPKDKKLTAKTPYKPFLFLNKKHFKGNFKDITLVNHEAMHMAILLNNWDIKDREEEVISLAEEITNKIVPLLKLDKFVS
Ga0209972_1000004632	F073459	N/A	LLFQLPTGKTVYLTIEEYLDLTEQDIQYLISLDYGESILNPFSGSAVDKQVQDKHYDFDYLPLEDDEINNIPSDDAPFDDIIDLSDSLDT
Ga0209972_1000004634	F078626	N/A	MYMTMKKDSRFEYVGKLENYQLYGNKKYMQYEQDSYSPYQNYLYKRALYGLNAISKEELATMCSKKKQRVNKVYQRAQVVINLYKQKLTNGYTNFVFKTLFPDSPITDFLLNNDETDPNFRNVLTFKDLNISKDQIISIFIEEGVLPKNFMSLSTNPDQLPRLKTNKL
Ga0209972_100000464	F014972	N/A	MATYIFPQFNVEIVNPTVSINMNTIGDKAIDKFLSVDITLTVPSAIFGVRMEDMPYVDTWDDSDVPGMVDIALQAYEV
Ga0209972_1000004661	F056551	N/A	MALSTTGLTEGGGGLPKTITPGNHTLKINSIVLENFKFIDGAYHMILNVETEPIAGFEGFMIDKDDESKGHYAGQIGRVKASQYAFADGVTKSGVKVQRDRSIMIFLKNLTSTLGISDWFLSQDNKHDTIEEFVDAFNNEAPSKDKFVEFCVAGKEYEGKNGYTNYDMWLPKGTKGAYAITPIGGDVIKFNEEEHLKKMEVKEVGSFGDDDLNIPQRAATDFSLD