Scaffold Ga0209830_10004861

Overview

Basic Information

• Taxon OID: 3300027791
• Scaffold ID: Ga0209830_10004861
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9616
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 77.0991
  • Long. (^o): -150.2252
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003043	Metagenome	511	Y
F013945	Metagenome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209830_100048611	F013945	N/A	NFFGNTFNFDLGKKENFEKLENQTHLNRVKLSKHDVDMKKLTVFFMNSSITQALEKKFNTKLTFDSADVWIDGKGYKLVPHVDDSRIKLHLQIYLSNDNEGTSLYNPQGELLYTFPFKANYGYALYNGAYSYHGVEEIEKDGRTSLYVRYQ
Ga0209830_100048612	F003043	GAG	MKVLITGGNGFLANSLKQYIAGDYYGKDMLDVTNRNCIRNLPTYDILIHTATGNVDVNNNLSLLFSKATKIFAFTSKQGTFINWQKSGPLNYGLEKLTLNFLAYRHNIENHTVQVFEPGHMETPQQYNNIAKKFSDVYLNWQFEKNMIYDLSADRYLAY