Scaffold Ga0209711_10141018

Overview

Basic Information

• Taxon OID: 3300027788
• Scaffold ID: Ga0209711_10141018
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1168
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009045	Metagenome / Metatranscriptome	324	N
F096206	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_101410181	F009045	GGAG	MNKLTEVFTPSKVSRGNRHIVKGQIVQGDNYQVEDVRRAFWSNPDGTHSAHLFRLERNLVVDRVTVDSWEGESLDEFAQRTETIIQGGVK
Ga0209711_101410182	F096206	AGGGGG	MSFIVDFGNIRETDKEGRENLNSLQYWIGSYMMAIGMDEITEKNYLEVYSRLRMLDTSILALGNDGDGEPWMHLDMLQRLIGAKFSGRHINVESRAKFSTRMLRNTISAVEDKVAKESKEVA