Scaffold Ga0209711_10122139

Overview

Basic Information

• Taxon OID: 3300027788
• Scaffold ID: Ga0209711_10122139
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1286
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041753	Metagenome / Metatranscriptome	159	Y
F055207	Metagenome	139	Y
F080510	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_101221391	F055207	N/A	MGVDTMLTDQRNSHKNPKDNRGFESIADIVIDIADRAVGGFDNLTDDSVTYPRMILKWYMSDDCPEPLNAEVYQKVMRENDERVFRAIWRRIHSRIY
Ga0209711_101221393	F080510	AGGAGG	MSWIEEDDLRRNKHGILLRKNQVHAPVLNVGDRFFDCGNGRWATLLRIRPDEEAMGAPFEALYDGCERFAPFVGVAMHCDIGEVDQYSNNTADHLAQKECCP
Ga0209711_101221395	F041753	AGGAGG	MIKYQVHFETSAKNGSIRRGIRTIAARNEEEAIIKAKSVVLGSFGHWVNRLANEEAI