Scaffold Ga0209711_10110178

Overview

Basic Information

• Taxon OID: 3300027788
• Scaffold ID: Ga0209711_10110178
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024584	Metagenome	205	N
F050674	Metagenome	145	N
F060351	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_101101782	F050674	AGAAGG	VDRIVNPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFFREYDGAVRRINTYWHMLPRFRHHNPDEFWKRDKVSYPPTYLELMVDDSDW
Ga0209711_101101783	F024584	GAGG	MYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYGILKEKLFESTRSLNIEAAYADRCIHWNQRDIDQIKPMTNMRNPWLRFKREFEQCLDGKMPSKNVEIALAWFYAAPYRDDWIAS
Ga0209711_101101784	F060351	N/A	MTRKYDDMVWKILGGMPIEVFDEDDDTVWENETWELVKTRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTISDDITALSHEIFNNILETFTEDKLIRKRPENIRKTFQLIN