Scaffold Ga0209711_10077352

Overview

Basic Information

• Taxon OID: 3300027788
• Scaffold ID: Ga0209711_10077352
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1740
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008914	Metagenome	326	Y
F009992	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_100773523	F009992	N/A	MSHDIGYVLGNGPSRDRSRTQYDGVTYGCNSIHKEMDVSVLVCMDAWYQFEVIASGYPADHECLFGDYNPIPAVPFGIKPEDLIPPHYDIHFYNPDDRRRATDWYYYATSAADYEKAKAENYALPYWKPDCGYVCWVGEDYKIKEIDYGVIPIGDLRPPSGAYALQEALKGGHDRVEVIGFDSIAGEFSVSLSNDRPEFELPSFPILEERMRKWLKYYRTVTEHYNEIEIIWHKQ
Ga0209711_100773524	F008914	AGGAG	MTDPFSAQIEAQREAAIEETRKWLRGWDAEQREMVLWILEEEVRHDKLMDFVHEDGSKTKSEKLN