Scaffold Ga0209711_10038354

Overview

Basic Information

• Taxon OID: 3300027788
• Scaffold ID: Ga0209711_10038354
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2742
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F025150	Metagenome / Metatranscriptome	203	Y
F062792	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_100383542	F062792	AGAAGG	MTPQERMTHKRRWRMASHFVYHTHTDLRSESKEWCKKNCEQHEWDLKQFTDIYGDTIRFEFEEHFNEFSNWYNARWSGV
Ga0209711_100383544	F025150	GGAG	MIKVTTEGKRFPEYDTFIDECIIALFPENAVYDINIRFKKFADKTGTHAGFCEGDDIESAIIVGTHWKYEDNEVIAYEPHEIASSLAHELTHAKQFCKNQINMIDHVWKHASETIDCVELEYAETPWEVEAYAYEEILTDLLWENV
Ga0209711_100383546	F005796	GGAG	MLVVELAVLMFCMIGCGMTCHALGKQEGIETTIEHLVDHGMLELEDEK