Scaffold Ga0209711_10022375

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209711_10022375

Scaffold Ga0209711_10022375

Overview

Basic Information
Taxon OID	3300027788 Open in IMG/M
Scaffold ID	Ga0209711_10022375 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3897
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	79.2466	Long. (^o)	-150.0613	Alt. (m)		Depth (m)	25
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F074029	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_1002237512	F074029	AGGAG	MKGKFSAVGFFTKHLNNISKKLTGETTLGNLQTISSVRPRPLRQVQLASNVVNFLNERKNRNRNRRS
Ga0209711_100223753	F020603	AGGA	MKKLIFILTISFLLTNCAKYTPLVNPETSKDKHSGNVIAGNYWKDLQACRYIHKENTATFVKVLHISDETVFVKKCMSEYGYTILR

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