Scaffold Ga0209711_10019750

Overview

Basic Information

• Taxon OID: 3300027788
• Scaffold ID: Ga0209711_10019750
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4234
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011891	Metagenome	286	Y
F017730	Metagenome / Metatranscriptome	239	Y
F098082	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209711_100197506	F098082	AGG	MIAVRYVSCLFVCALLSSPAVAGIWALKTTEVPQATYPLNVDPVDFEAILKTYNTYMSAFAESDFHTMADQMDFKSKSLTWSNRLDAIDNFSFIKDHILPDYSHSDAFDISFISPKVGGYVLFIQRIDKNASDDRISSAWSFYEFIEVDNNWKISNVMTIPSLRSPF
Ga0209711_100197507	F017730	GAGG	MATKLLHLDTRVTEDFINGIQSSKGPTRSTGTHLFLNDLLIARRDPDGQIFAVRKGMNAEAEAMLREGGY
Ga0209711_100197508	F011891	AGGAGG	MPSNVISLSTELEAREHRRKLTPKQEMTIRLRSDYNKKARLRRAIEFHKIAYKHRAKEYVEVSERIELQEEKLKILS