NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209711_10016334

Scaffold Ga0209711_10016334


Overview

Basic Information
Taxon OID3300027788 Open in IMG/M
Scaffold IDGa0209711_10016334 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4775
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Marinobacterium(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094406Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209711_100163342F094406AGGMFTKVTPVRPYWSEIRDKMFTQITVAGFTIDEADVIGINQTDDTIMSHLMTREGHILLVPYNASSSNDTAMKTGLDVVFAIHDNIPKLFPSPIIMPVANALASSLRSRLAEERGSGRLTPQIDRQILFIAENDLDRPELALRIRSHVEKLYQAHALLDT

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