NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209711_10013089

Scaffold Ga0209711_10013089


Overview

Basic Information
Taxon OID3300027788 Open in IMG/M
Scaffold IDGa0209711_10013089 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5523
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005796Metagenome / Metatranscriptome390Y
F025150Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0209711_1001308910F005796GGAGMLELVVLMVCVCGCGMTCYHLGKQEGIETTIEHLIDKGMIEVDE
Ga0209711_1001308913F025150GGAGMINVYTEGRINNDYDNFIDDVIMAIFPEDAKYDIYIEAKKFVDKDGTHAGFCTGDELESVISVATHWVFEDGEEIAYEPHEMASNLAHELVHAKQFCRGQINMVDNVWKHNNLVLDCDHVDYIDLPWEVEAYGYETILTDIYWGNDQ

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