Scaffold Ga0209246_10147217

Overview

Basic Information

• Taxon OID: 3300027785
• Scaffold ID: Ga0209246_10147217
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 926
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001129	Metagenome / Metatranscriptome	768	Y
F059754	Metagenome / Metatranscriptome	133	N
F060863	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209246_101472171	F060863	N/A	MFIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYAFFVFYSNSWLPFMQRANTDSADAAEVRFINCLEVRMYNLLNA
Ga0209246_101472172	F001129	N/A	MLGQGGTMEFVDAAVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYALSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0209246_101472173	F059754	N/A	VVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPT