Scaffold Ga0209246_10039148

Overview

Basic Information

• Taxon OID: 3300027785
• Scaffold ID: Ga0209246_10039148
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1815
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F021732	Metagenome / Metatranscriptome	217	Y
F031483	Metagenome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209246_100391482	F031483	N/A	MNILKGKVKYTAGKVFEGQYGASINAAITLENGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANELPEKVQTPTEGNNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF
Ga0209246_100391483	F014956	GGA	MKIQDFALNASITVCPNHIVEPDHLKIWWRKRGVGELEKYFVSGKSIYYNEEIDWKKISNHKKQMWYDSQNFQINMGNEYSKRQG
Ga0209246_100391485	F021732	N/A	MSITKFTVKCCLDKKLGHFVHVIFSSGFGLYGQTKPHSPDDNIEVHGWTFEPHDLDLQLYPNINRFNLMPLVDENELDWVIIKD