Scaffold Ga0209246_10009965

Overview

Basic Information

• Taxon OID: 3300027785
• Scaffold ID: Ga0209246_10009965
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3519
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049625	Metagenome	146	Y
F054861	Metagenome	139	Y
F054866	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209246_1000996513	F054861	AGG	MNTKLLKHTRELFKSYDVPEHVRRSYRLKWVRSIRHLGDKWLFAKQITRKEPTQ
Ga0209246_1000996515	F049625	AGG	MLSDIDLKDWIEQPSIPLYDVPRETPIKTPMGMLWFKHIDGMYSLNYDANGHPVHMKAWVKVNPYRRKSDE
Ga0209246_100099658	F054866	AGG	MSKYTITHGSIAAVQYVTLPDGDRIIVTDARDGSEIELPLLPVEVQAAVNKQFGTIFALPYDSRQGFIDDSIPFDVEVSE