Scaffold Ga0209246_10004633

Overview

Basic Information

• Taxon OID: 3300027785
• Scaffold ID: Ga0209246_10004633
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5119
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F038673	Metagenome / Metatranscriptome	165	N
F045761	Metagenome	152	N
F068841	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209246_100046331	F038673	N/A	LTSNGQVLIDTCVIQEANHYLVKGAIARRQVTVLRKIVTSDSVIIDQQDSIIGKQKTNIGYLKDDNNALVKRNKAISRTLISYKMLSVVLTILSVVMWLK
Ga0209246_100046332	F002909	N/A	VAQIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPILANLDANNSIASGKLRQSFAPGNITKSPTSINTILLAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLKTWISQKGIKPAEGQTYDSLAKAIAKKIHRSGTKPRPFLEKAFTESIQMELVNELNARFGDLIFSEDIKI
Ga0209246_100046334	F068841	GGAGG	MIELAINGWILTLKGRISEEKYVYTIEAVDNWLIANHIEELQDYLNSTTTGFGDCSIREFDGINSEAFFNAEPTKFKVLFMIGQRTNFF
Ga0209246_100046339	F045761	AGGA	MIQNYLMIGMAILFAIALVQLHRMSKEQEELIEKLQNKNRLIWDYETELLGIRSRIQEANDRAKTWELQANFLKELNDDKNKSTRGKSINK