Scaffold Ga0209448_10101680

Overview

Basic Information

• Taxon OID: 3300027783
• Scaffold ID: Ga0209448_10101680
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 963
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F061180	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209448_101016801	F004352	N/A	VVTRPDRDGDQQLRLIDDAWDKASQHWHDGMTRQFDTDHWTPLLRESRGYLEALRKLMDMLEAADR
Ga0209448_101016802	F002850	GGA	VTSIHADVDALKGLHEALVRYRHAQREVAGRGEEEIKVVRASLEAKASRWRAQLEQCQAEFGDCQERAAQAAADGPVAGDDPVDCSGYARAVEQCRERLEQIRRWQQRIDAEASEFGGTASRFGDLLENDLPRTEEHLLALIRSLEGARRVQAPGT
Ga0209448_101016803	F061180	N/A	NFATIQSHWRELGEVWRDDMYRLFGEALEEVTPGIAQYLSATEGHEAHLAALIERLGAYLETGAGAGLGVNRPETNRGTGRGTERRD