Scaffold Ga0209448

Basic Information
Taxon OID	3300027783 Open in IMG/M
Scaffold ID	Ga0209448_10000030 Open in IMG/M
Source Dataset Name	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027783 Open in IMG/M

Scaffold ID

Ga0209448_10000030 Open in IMG/M

Source Dataset Name

Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	52635
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (60.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

52635

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (60.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location Name	Calvert Island, British Columbia, Canada
Coordinates	Lat. (^o)	51.62	Long. (^o)	-128.09	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Calvert Island, British Columbia, Canada

Coordinates

Lat. (^o)

51.62

Long. (^o)

-128.09

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000828	Metagenome / Metatranscriptome	872	Y
F005961	Metagenome / Metatranscriptome	385	Y
F010410	Metagenome / Metatranscriptome	304	Y
F055955	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209448_1000003035	F055955	N/A	MRVVEILADKDSRYKIGRQVSPTLTFKAGEEVQFRITAKKAKTFNRNGSIHGFALIRKKDGAKIPNWDLELKPGYQEFVLRVPSEPGEYQIVCTVICSEGHEDMNMKVIVIA
Ga0209448_1000003038	F000828	N/A	MGKRMSIFDEKYRVVAIEGDRLLIRGVVSGDVLAIVNPEPETPLTQEDYPLGKLISLTDPSVAPLN
Ga0209448_1000003040	F005961	GAGG	MKILLFAGLLLVVLGIVSLVVPIPQTQTDRIKVGGANFGIQTSHSERVSPLISVLLIGGGIALSIAGTRARN
Ga0209448_1000003044	F000042	N/A	VPAAIRQFENLKGTMKNIKFVVKLNRGAHAPQYVLRVDRLPILTTTNRKLALVMGRFTAEDAVKSMQNSHCTPELVSVRVSA
Ga0209448_100000307	F010410	AGGAG	MHSTPANAKSFSKFSTGFGIALLLIPAAFAADGKDQDKDKDQQAYCRYVTEQASAQRDLLLAPNAVVGVTQPNTGLPMQLVWGVSGSLSSMRKAGLTMNAARRNCELYSASTSAQRDIQYALPSLEKQALQNRLGLIQHASESLAALLATTAKMLDAQNMTRPMAFALQTTKIKLDADRADTQLKIVGLYTLPLSDRPLKELVAEKQSREVNEQKALDKLSRQNDWDVALSVGAHQQIDPLVDTKGAYGEVTVSYNLASHAINKHLDRAADAYDDWKKVQEGDVIRNADVVKQQVEDGISVQDNRLKILQEEQKQIENNVQLLGAAETSAALDFRNQLTTAQLLLEIEIGDASFRLEQLKEFLGRNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209448_10000030

Overview

Ecosystem & Geography

Associated Families

Sequences