Scaffold Ga0209448_10000001

Overview

Basic Information

• Taxon OID: 3300027783
• Scaffold ID: Ga0209448_10000001
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96871
• Total Scaffold Genes: 87
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (64.37%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F001591	Metagenome / Metatranscriptome	667	Y
F071890	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209448_1000000112	F071890	GAGG	MNGANMNNANVSNDSIELLCNHCGKTFSAFLHEMADQNAKVVCPDCRESPDCKPAKATKKVAGARSVKKTI
Ga0209448_1000000114	F001591	N/A	MDRGKERRLSLELTVRIWGVDRMTRPFAELVRARNVSDTGAVLMGVRSKVQAGELLDVQLGESRAQFRILWINLSGEAGIQALASEPPILGIGLPKVYEMVGTG
Ga0209448_100000012	F000858	GGAG	MSGNGYLFAAYAVTWIIHITYLGTIVRRYKRLQGEIEALKKTGPRS