Scaffold Ga0209500_10039563

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10039563
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2594
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007570	Metagenome	348	Y
F013404	Metagenome	271	Y
F017612	Metagenome	239	N
F050211	Metagenome	145	N
F050215	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100395631	F050215	N/A	TKSDSDFRAVTELNSLVSDVEKKYVKDILIQLKDTFTKLKIKYLVGEFSGGHDEGGFDSAYFADEKGEAITIPEEEKISFMKWVDMDIIYNFENAKQKKTTFYSTTTNKRINVLEELEDMLYKAGCLEEYGSFAGDFRVNGTVKLDVFTYGWEMDGNQSVEQYETVSEMGEL
Ga0209500_100395633	F007570	GAGG	MKEDIKVIKQYIKTFNDRKLREEYRLYTSLERPTILENYFKDFIKQEIDTRGIGVXLKNTLKLQTHTK
Ga0209500_100395635	F050211	AGGAG	MSEYNNINLYDVMFCLQDDDGNMLEDKNGKPKLFRYKGDIYSPFDYLQSITEDTTLEMLEDVKXLIN
Ga0209500_100395636	F013404	GAGG	MTNKLIEEHKQLQEALAIMCCNADEDCPLEYRTEHFKSAITDGYDLLKKVGYFKNKKRVNKWDT
Ga0209500_100395639	F017612	N/A	MSIPDVDVPIGFLYETTLMKYASGKLTKDGMIMTPDEALEHFKQLAIDEGFAESTIENSAEELIYDLKEVEERKYQEYLEEKEXAKHT