NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10029969

Scaffold Ga0209500_10029969


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10029969 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3076
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003688Metagenome / Metatranscriptome473Y
F010599Metagenome / Metatranscriptome301Y
F032149Metagenome180Y
F045545Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_100299692F010599GGAGMEMMFLIFFATLSFSFGLSYWATFDKLKKSNLLLAELFIKNRALEEVNSQVNNGINMSDDTLHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELKVKGLDNYSDKLLALLPEIGQERK
Ga0209500_100299694F032149GGAGMKKKIIILTLSTISVLVAISLFFASRLSQLSDLDLFDIEEDD
Ga0209500_100299695F045545GGAGGMIKQIALFFVCKIKTHNFVDAGSCPFTGKSYNACLRCGVTITK
Ga0209500_100299696F003688GAGMEQNTMGKKIMYTDEMRKAVHSITPPKGFGVEIIDNEHFLTVKLDERKFLHMGHDDKISALQYVVKIKKALEECAAIVLVTREAIK

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