Scaffold Ga0209500_10024456

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10024456
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3472
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F004599	Metagenome / Metatranscriptome	431	N
F006539	Metagenome / Metatranscriptome	370	Y
F042333	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100244563	F006539	GGAG	MIETTAPWIVLYCILGYFIGWGFYSTIKDNAFQSGYWKGRKDGYDMHRRITDSKRDQVFDYDKQN
Ga0209500_100244565	F004599	GAG	MAFNLADYEDVATLNKWLISNYPNFRSDISVVSADPEKGFILVQATLWRDSNDPSPAVSNIAFGSRDTYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESEPIKNIYGKSGNSQVIEMALRKSFADDAKPASEPTTWSVGDIAEALSNKPKQQECVHGLMILKEGTAKTGKPYYGYVCSAPKGEQCDAKWAVTAANGSWFFREED
Ga0209500_100244567	F002162	N/A	MPNYDYICDREGTSIVLDLPMQHKIPLCQVCGFELSRVYTAVPAIFKGTGWAGKSGKV
Ga0209500_100244568	F042333	GGAG	MDGYDTADGFRVFQCLKCCAVGTKNLAESTDTQEPVMRCDKCGSWQFTDQKCHTCKLIGA