Scaffold Ga0209500_10023567

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10023567
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3549
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017788	Metagenome / Metatranscriptome	238	Y
F020851	Metagenome / Metatranscriptome	221	Y
F034566	Metagenome	174	Y
F054581	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100235674	F017788	AGGA	MKKIIITSLLIALLISNAPAQAATTSLNTKGNKSSCKNIKANYKSEVIANWSNGLASDQDVLKEIDLNIGMLTSKQKPTSGKIKTTISSWITAEKNTKIAITDKNFETITAAMNLKIASVTNFDKLCKSIEK
Ga0209500_100235676	F034566	AGG	MRFKLKGIIWVQSFLIIILSTALLFLGGDLKQSRKMILDQSNYCIKYTSDIIASSRLDLIREQDAHIRTVDKANSVIDDIVNRYNSIVARYNKSTGGTNYDPLNTYSYRIRP
Ga0209500_100235677	F054581	AGGA	MCPHCNAKLIPILYGFVDPKYVDMHKEGLIFLVSTTYHTKNSPTSYCKKCEESFDIKLS
Ga0209500_100235678	F020851	GGA	MSKDLVDLAISMTEIDTGMQLPLEEREAMAKRILDKIKTINLV