Scaffold Ga0209500_10017261

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10017261
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4276
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027440	Metagenome / Metatranscriptome	194	N
F044452	Metagenome	154	N
F063631	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100172611	F063631	N/A	MPQPNENQEDEKQINSYQLWGLLFPSCACHVDTERSNFIRRTPGNNLAHAIVTSNETADWVKTRCAGEHIHIQRVDEDGLSYSVVWDATEWNLSDERRKTLRASHFASDVSYILKKAEALRIELIGDALAKAKLFTRQKATEVAIAITSQGEEVYLTKSRQLNDALKGAFNNINCYFPIEEVIKIVDTRGVIDKLNNHEQTTTEQVPEGSSPAEEQDGQSHQEERPVETG
Ga0209500_100172613	F027440	N/A	MSSTKNLELVASFAGSVFTSDNDGNPVFVTSERHVRKTAKSAERIVSFQKPVLAVSNLQYWIKRGEALVEITTEHITKTKNEDGSVTETKRISNALTDLVEEHLNDIAEDASEAYLSKGNTPDYFAAFIYGVSADRETEKSVLKKIDSIRSEIGSIVFSMAGEWSDDVARSLGVSDKEAAIAKQSNLIGSLAQLLAKANELNAAKAKRESKKAKV
Ga0209500_100172616	F044452	GAG	MTNRCLRCLQLIDIDRKSLGFDRCIKCAPQWSYKGALNFGHKTGGSIQPMHPDVFKVHKRVTARSAKGTNGRAFQTGTTNITIKDA