Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10015501 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10015501 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4555
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4555

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004638	Metagenome / Metatranscriptome	429	Y
F007466	Metagenome	350	Y
F029109	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100155013	F004638	GGA	VNRILVELAIATGIPMSEWITAEQIYTAKEILEARE
Ga0209500_100155014	F029109	GGAGG	MTFKATKGQGTFRIECEPYALKNLLQTLNMLDKETQGRVRDAAQPLSQRLAGQIMQFGDASPTPQTKLVLKSIVTPRDRLIRVDVGGAKKVGRPYGGTASKSGKGNKVGRSAAPAGALLWGSEYGSRQGVDRAGRKFTNRFKAPYRKDGYWLNKAVDFYTPIVAKEYIDLVQSVIKNLEL
Ga0209500_100155016	F007466	N/A	VTQWSPIWNVSINGVSYTTVTLANLSITSGRSNIYIQAQAGYATINLINLNGAAVVPTINDALAIQVKDTSGTFVPIFGGSIVDVGVTVSQVGSVGISQTITITALGALARLQKALTNGVLTQDFDGNQIETILREVLFAQWQQVPAALTWATYDPTTTWANAENTGLGEIDTPGNYELAQRSSNRTDVYSLVSALATSGLGYLYENAQGLISYADSTHRTTYLSTNGYTDLDANQALGQGIKIQTRAGDIRNDLTIKYGTNSTSEVSDRDEASIGLYGELAQIITTTIKHAADATDQAAFYLSLRAYPEPIFESITFALTNPELDNSDRNALIGAFMGQPINLTNLPLNMSSGTFQGFIEGWRFSASYNELAITLLLSPLAFSLQAMRWNDVPIVETWSSVSPTLDWQNATIVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10015501

Overview

Ecosystem & Geography

Associated Families

Sequences