Scaffold Ga0209500_10013284

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10013284
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4994
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F027417	Metagenome	194	Y
F083901	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1001328411	F000821	AGGAGG	MNEEYLSAKANLCLNQAEKDLKENEIAKAIKNLERANSALSRIFNLEEDEND
Ga0209500_1001328414	F027417	N/A	MGYNYRVTFVTDYLTIITNVELELDDTTGNYSGEAYEQAAINGKNNIEDEIGKIDETIINDITVTLILDDEEIELEGEDE
Ga0209500_100132848	F083901	GGAGG	MTQPTKSKSVLTYRTYRKARDRALIRLSHLYPDTYKQLLAIERKFDEKEGKDWTGIDELINLSVGTHTRANGTPPFGDPADAGEDEGYYGGEA
Ga0209500_100132849	F001477	AGGAGG	VSRILRFDSKGEPFLGDPPSNIYTIHPKKSPLILLYEVVDEDGVAEWGGENAEHCMQWLSLAPTGSRVLVSGWDSDEEDAHLVGQPLDITDIIKAASL