Scaffold Ga0209500_10012798

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10012798
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5112
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y
F006659	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100127981	F003714	N/A	ETVTFAGRVLPLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDMTGTTWVNVRRRGPYSSRNA
Ga0209500_1001279810	F006659	N/A	MKKDIKHSSEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKSTDAK
Ga0209500_100127982	F005588	N/A	MTIIRPNSKPAFWWLVPWAYACELHRAANAVKAYADKADRDILHQKAVIANLQADIGMLRQRIADQNDAIIRGTAITPDAQPYTE
Ga0209500_100127983	F000957	N/A	MSSFQHLEGMRNLLQEIYFINERISTGDIVSPKAALASTNLKKILTHYHEALHEDGAVKVSLQAYIAAGGWVGIQYSMEIDGFEIAGSQVPRRI