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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027782 Open in IMG/M |
| Scaffold ID | Ga0209500_10009017 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6222 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004110 | Metagenome | 452 | Y |
| F009331 | Metagenome / Metatranscriptome | 319 | Y |
| F028460 | Metagenome / Metatranscriptome | 191 | Y |
| F044984 | Metagenome / Metatranscriptome | 153 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209500_1000901712 | F009331 | AGGAG | MICQNCHKAGEENTLTHYKRSAHWHEKCDDKGCVCQHKTGPGYVKRTGTKVPLMQTQSP |
| Ga0209500_1000901718 | F028460 | N/A | SQLPALILTLGYDPSQAMLKVAAVKNRFGEHTADGSNYAQLLVNYAAVQISDQNEFGWMLRRDAMTGYQGGYNV |
| Ga0209500_100090173 | F044984 | GGAGG | MTETKRRMATASRKAVRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRATGTDDLAYSSSRGADEGNNGGKA |
| Ga0209500_100090179 | F004110 | N/A | MVNGLVTELHPVIYDLVPSVANTIYRRYNKHLEKDDIKQELMAWAMTRVEDHTVDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKKGYLKLEQDDQAILRMRHHESFTLQQIAQVLECAISTADRRCAQSLRRLQDNLGGVSPWQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |