Scaffold Ga0209500_10008952

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10008952
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6250
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007466	Metagenome	350	Y
F007799	Metagenome	344	N
F011152	Metagenome	294	Y
F016529	Metagenome	246	Y
F028163	Metagenome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000895214	F007466	AGG	MTQWAPVWRVKIDGTDITDSVLANLSITSGRTNIYAQAQAGYCSVTLIIFGQAALPYEINDTISIEVQDTAAAYVPIFGGSVVDIAVSVSQVGSSAYTQEVTITALGALARLQKALTNGVLKQDFDGNQIATILGQVLFNTWQQVPAALTWANYDPTETWANAQNTGYGEIDTPGNYELAQRASNRTVVYDLVAALATSGLGYLYEDASGLISYGDSTHRTTYLATYGYTDLTANQALGRGITIKTRAGDVRNDITINYGTLSASQVSDKDQASIGIYGDLAQIITTTIKHAADATSQAAFYLALRAYPQPIFDSITYALTNPELDNADRDALINVFMGQPIALNDLPPNMSSGTFQGFVEGWTFRASYNQLDITLLMSPLAYSLQAMQWNDVPITEAWNTVSPTLEWQYATIVS
Ga0209500_100089524	F016529	AGGAG	MPLLRFDCSICKKLYGDGRKEHLITKGAELTEHEWFAQCSGCGAFSVKLIDNSLVKDL
Ga0209500_100089525	F011152	N/A	MTISAADEWAIHKRAVDVVFSYSGQLGTMIRYNSKLNNHEQVTEYAESLGAEMIVARYFGLDYDINLSNGKRGADVGQGLEVRWTSYVGGNLIVYPNDRETDIAVLVVGKSPVYHIAGWLPVAFARRKRFKNPRQDSWWVDQANLNPIETLVRSEYATAAI
Ga0209500_100089526	F028163	GGAGG	MSRVTEMIDVDTMIGRTLIDGKIVAEFKCETCDHCQRIEILDRAGYQRDVFGEPILWFCGKCRK
Ga0209500_100089527	F007799	AGGCGG	VSFLDNYEDVAARIQRFWATHKDGKIHTSIMDINLEKGYVLVECRVYRHYDDQEPAGIDYAFGNVNTYNVQMKKWFVEDTVTSAIGRCVGLVLGADKRPTVQNMQQVERIDPKIVQDSAVAYDYWSTKHGDVPSFKTREEAEEAGIPTLGVAIDTIKETLGGVQVAAAPLCSHGHMIWREGTSAKTNKGWGGYMCSEKVKAKQCAPAWYMLGSDGQWRPQV