Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10008906 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10008906 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6267
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (70.59%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6267

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (70.59%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F009331	Metagenome / Metatranscriptome	319	Y
F016642	Metagenome	245	N
F017972	Metagenome	237	Y
F021756	Metagenome / Metatranscriptome	217	Y
F023834	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100089061	F021756	N/A	YCKFYCKFYDASGEMGCVGIKKEHTPVTDIVIEDADIDKNALLYLQLAGQIKELEKHQDSLKASFEGLLGTTHSGIEVSWTTVRGRESIDSEEVEKLIGFVPKKFGSESQRLSIKQTGGK
Ga0209500_1000890610	F003784	GGAGG	MYGDDRERVGHNATDFAAYGLSHLAPRQDESDHTDTPAANPLIDHAAVTGYRALGVSTEDLTSFIESFASLRAMRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCD
Ga0209500_1000890613	F017972	GGAGG	VRTGHLQLVTQEHSATTTTRSSVCSPFGPVNPASTTLLAQKTLRANQEARLTELLNSLESVVDSLNYKSFTVYDTLVIATENLRVALSNIATDEAGTDTL
Ga0209500_1000890617	F023834	N/A	RAKAQLCQDLAILQVQDEETEKEAGMNLMRMVYALSMVDTFKQGGSDDKD
Ga0209500_100089067	F016642	AGAAG	MIVQLSKDEVRVCTLLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRVKLPDVGNNYEVRTVRTRDSIPFWSKDNGKILVGTKILDEDYYSQVEVYGYCNPEEYATENYRDMTISGWRVPVTELKEFK
Ga0209500_100089068	F009331	AGGAG	MICDNCMKAGEENTLTHYKRAGNWHDKCEYEGCVCQHKTGPGYVKRADSKVPLMQTQSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10008906

Overview

Ecosystem & Geography

Associated Families

Sequences