Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10007448 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10007448 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6925
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6925

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F078232	Metagenome / Metatranscriptome	116	N
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100074487	F028149	AGGAG	MATGNVISCKQFASFLVSQEPVYDKEVLKDVRPFDGLIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWETSTGDSCVGQPCDPSENKIGWGYTRSNYSLEKQAWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYTATGISGGAFACKAGLPAISFSWVGTGYTTLRVLDSASAAVTAASLGLLTPDILRSRVTRQYFLGAIQAGKEGYDSLQLHTDKETFRYLAKSNSQLTDSWRFGEFAPAAKEFYKFGFMGFVGDFMVKVLQFPLRFNATATAGNYTLVLPYKNVAASEGIRSEFNGDYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGRPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGTCPVIIAGCAADPGDPAQDYNSTNAVCNPTLQFTAVANDAGNFVLGTTAIMCNDNIVTNAGISEATVAALVSSLQTVWDAEFGAASGTWSVVSGNVIQLASSAFGTTTEVVPCTNVTLEFSI
Ga0209500_100074488	F097235	AGGA	MYGKMMRKRKMDAMNRMGAEVETVEFMPPEGMKLEGESGSAMVDWRMTPNGTVEIVAFDGVTLGESGKQDMEEDAAENKMDNIKEEA
Ga0209500_100074489	F078232	AGGAGG	MPVLTPQELASTGGCFDCMEPGLQQTMLLSLLQQIQAATIDAARTTTSTGGLLTITATAAANPGRRRFVIQNQKAEHLHVKFGTGCTASDYHYVLQSAATVGAPGSSLIFEGYTGAISVAPVALNPSYTFAEFV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10007448

Overview

Ecosystem & Geography

Associated Families

Sequences