Scaffold Ga0209500_10007173

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10007173
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7069
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F045761	Metagenome	152	N
F055558	Metagenome	138	N
F068841	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000717311	F002909	N/A	VAQIDLSKLPDALDTYLGDASQGSLLQQIIVEWWNKKVIPPIWANLDANGTNASSKLRQSFAPGTITKSPTSINTILLAEDYWEFIEYGRKPTRGGHIEGTPYLWQSLKTWISQKGIKPAEGQTYDSLAKAIAKKIHRSGTKAQPFLEKAFTESIQMELVNQLNARFGDLIFSEDIKI
Ga0209500_1000717317	F055558	N/A	ESNTIEVLSDTAQIMADIFALVDNNNQSDGDFELSINGNASPFYDSKTDILAGYAINFQVLTPYLTNSCVVPV
Ga0209500_100071735	F045761	AGGA	MIQNYLIIGMAILFAITLLQLHKTSEREDELLEKISNKNRLIWDYETELLEIRSKIAEANDRAKTWELQANFLKELNDDKNQSTRGKSVNK
Ga0209500_100071739	F068841	GGAGG	MIELAINGWILTVKGRICEEKYVYTIEAVDNWLIANHIEELEDYVNSTTSGFGDCCIKEFDGINSEAFFNAEPTKFQVLFMIGQRTNFF