Scaffold Ga0209500

Basic Information
Taxon OID	3300027782 Open in IMG/M
Scaffold ID	Ga0209500_10005131 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027782 Open in IMG/M

Scaffold ID

Ga0209500_10005131 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8585
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (25.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8585

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (25.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034110	Metagenome	175	Y
F053984	Metagenome / Metatranscriptome	140	N
F062690	Metagenome	130	N
F100413	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000513111	F053984	N/A	MENQIIPTENAAVSVANEITNFAELVAKSTNLDKMEQVLTLTAEYIELEKPSESFRGIFIGTQTMNMTDKTTGEEKSIEAVRFLINKQVFINAGVVLVNEIKRAAVTVGTPVEITYLRKEGNTKIYQVTLLG
Ga0209500_1000513112	F062690	N/A	MAKRKNKTLKRVVAKSGQVYFFKGGKRIATKKGEKLFRKEIVSNLRPTPTNLTPQEELFLKRSIAAKKAAANTYKYQGRPIPRIYAVLMQKLFPKVDFLQTMDLSKWRDPNTGKLIFPRYSDIQKNIDNASRSDSEIFKLLTEMGYFKDKQGRTALIDICEIIQQKEYDRFKFILIDAGGDEIRGRVAVCTAIRDFEVDVTTEIKDALGMNVVKTYFDYSPNYDFTKKIFKLDLQDQDPDIEIADITQTQTGQLILPNGKNKYKNVLITYSVS
Ga0209500_1000513113	F100413	N/A	MDGLTLKRTPDAIKWIQDSLETSDIDYVLKHGTYTTQIEHSMGTIKLMLNNFQNRVFCASQMVKKDCKNSANGQEIMKATHQKKNYDANPKIENVRYDTCFNIDLSSAYAYCLFNSGLITQKTFNYLLKLPKMERLTSVGMLATSHVKYFYSGGKCVDFKPYREPTAQIFFYLIDEINYLMQDIKWMLGNDFIFYWVDGVFIKPTTPKSKIDKVENLLISLGYKYKYEKVENFSVNRIQDKVIIDMIKNDESKRYEFSTGATGRELGKHIAKKAMQDLQN
Ga0209500_100051314	F034110	GGA	MTLPQRTTDQLQKQGEQLLLQCYEQENGTNCYGHTPRRSSSPDYLRAKRKALSIAKKYKDTPLYLHLKSNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209500_10005131

Overview

Ecosystem & Geography

Associated Families

Sequences