Scaffold Ga0209500_10004695

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10004695
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8981
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F012016	Metagenome	284	Y
F031359	Metagenome	182	Y
F049426	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000469513	F006587	GGAGG	MDFRYEGTGFVVVGFIIGCCLTWAVMQSMHVQKKYKMNLKCIQGELYEEIRPNFYVKSHLECFEQRSF
Ga0209500_1000469514	F012016	AGGA	MEQQPYAWAIEEFNSDGELVWSSMSNFRPTELSWIRDLPSKKHNIVLTPLYKDESKAEKITGIKSYKESTQKMMEAYNGL
Ga0209500_1000469521	F049426	GGA	MKTKPIYKDYDREIYMSEFTTIPKEKYRRMIISEVLGWGIAVFLLLITLLR
Ga0209500_1000469524	F031359	N/A	EKQIIVEQVIVTGYVKHANGRKSPFAFNKNDFEAKDLQSILNGVGRIYQ