Scaffold Ga0209500_10003986

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10003986
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9888
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027781	Metagenome / Metatranscriptome	193	Y
F042160	Metagenome	158	Y
F060701	Metagenome	132	N
F064395	Metagenome	128	Y
F093230	Metagenome	106	Y
F102529	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100039861	F060701	AGGAG	MIVSFMTALPEKQVEKATDWMKAMPRSVRKTLRLTKPRQRNVNTHDGVDDYLAVDCRIDTYHTQNLEFLDREFGFDEFGDIDDEHEGLTITESMDEVTSFQYLIGYDIL
Ga0209500_1000398612	F093230	AGGAG	MQALNYTRLNSISNSVSPYRGSLNRFPIGSRRQNNKYFLVGEENGERVFNIVHGQHWKSVQLTKQEHDELVKQGSPRLHSYQDSDGKWDYYKYEVKPNILGVVRPDNTFEFTGSSFGQGDRGILSSWSHGWFSTDSRRGGMVWTSRTNAGTRIMPVYRGMRVDCETTQPTKPITVVGRKVDRKVGKTLLAKYVDFYMTTEVMTKAMDYDVFVKTMVEVVEEHLGEINSNTNWSVFADKADTLVNSAPLDAAMLYIYAWDVGNMRWNVRRFMDTSYSRFSAHEDTPHDMFINLKRRLNKEIYKANDGVFKKVEYTNQEMYPPSEWGYTVMVDGVEVKQYD
Ga0209500_1000398614	F042160	AGGAG	MINRYYLDGFGTEEQLNELLASDVLPLVRELQFKYGLKVMGKVFNTSYPQEDKNAYMMCYPNGLAVCKVWTTVLGGVKNDQLEFCFRSQYYAKSRGQDQSDRETIRSTKLSSLMAVLKRQDVVRSKKELMDDKIKTVKNGAHNLRKAMGNSDKSMPFTPDEIHAMLATLLGESTDGIPVALDLHKCQNTLDIYKEADRIRGIKIEESKRFFKNPFYLIGIDDYHHLLIGKFKMTILHSDTHKIEYEVIEDFKRIKDIEDYPELVPLMTMMKVSYENKECRRIGKLNFPLLDKYDEGLDAVFFYNSNPTNYEHAWMATPCST
Ga0209500_1000398617	F064395	GGA	MNEEDRSHLRDLHAGFALVGLLIRGGTVTSLLAESAYEIADAMQEARNQHGVGIVSIKRQTKKEKANETQ
Ga0209500_100039866	F027781	GGAG	MELQKPDHLISLASSAVLVSVDVNVWSATKQDRIISNEVTASKNADKSAGRYVKNLLADHPRHKAIVNYRQTIYNWVKRRTYRWNNSQDLLPSVDMPKFKAEYHAHQAAFNTLLGDFILAYDSIVSDMAFKQGDMFDRNDYPAKEQLVSKFGVQLFVAEVPMSDFRCGIASDIAEDLFATYSQQAQEIVSHVMVEQQSRFIEVMKSISHCCGVDDVGIDDNTGETKTKKRKIYDTTILKAKEMCDTFKGFNLSGDPELEQARASLEKALSGVTAEDIRESDAVRHAVKEDIDDILGKFSSFKCV
Ga0209500_100039868	F102529	AGGAGG	MTFSIAEMFLLVWAIVATLGYGYSRGELKHHRMVTCDLLVKIAKGTIKVTETDDFIEFKEVE