NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10002814

Scaffold Ga0209500_10002814


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10002814 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12134
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (59.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015302Metagenome255Y
F030333Metagenome185Y
F040990Metagenome160Y
F089853Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000281411F030333AGGTGGVAIDRNPHLTIPVKTYTHYTECEPWCLSNIGVWNEGWWRDFPDMAMAVIVEGPHEDCYWFSNERDALMFRLRFV
Ga0209500_1000281413F015302GGTGGVSKDEYYANPAARLDTIIGGDTSHFLRLQRVKTEYDALARDVPVGQGFLTFYDYVKEYYGVKLVYDGDDLKLEYAVIDERKYTVFLLKFGQ
Ga0209500_1000281414F040990N/AMNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSTRVWLENANGVYQVHPAWHGHRSVDPHEFTLVKLRAKTIKWWTGE
Ga0209500_1000281417F089853N/AMKIASVMAPSSGDGHVAYRGWTPCIEWCDEHCEGPWLFVSEGVFEFEWDSDYIMFMLRWG

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