Scaffold Ga0209500_10002285

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10002285
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13793
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007466	Metagenome	350	Y
F015073	Metagenome / Metatranscriptome	257	Y
F032154	Metagenome	180	Y
F047498	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000228513	F007466	N/A	LTQWAPIWRVKIAGVDVTDSVLASLNITSGRTNIYEQAQAGYCSITLIVFNQAAIDYEINDTLSVEVQDTSAVYKPIFGGSIVDIAVSVSEVGSTAYTQEVTITALGALARLQKALTNGVLTQDFDGNQIDTILRQVLFAQWQQVPAALTWATYDPTVTWANAENTGLGEIDTPGNYELAQRASSRIVIYELVADLATSGLGYIYEDANGQIGYADSTHRTTYLATNGYTDLTANQALGRGITIKTRAGDVRNDLTIKYGIVSASQVSARDEASIGLYGELAQIINTTIKHQTDAEAQAAFYLALRAYPQPTFDQITYALTNPELDNGDRDSLINVFMGQPIALNDLPLNMSSGVFQGFVEGFTFRASYNELSVTLLMSPLAYSLQAMRWNDVPITETWASVSPILTWEYATIVS
Ga0209500_100022853	F047498	N/A	MKITAADEWAIHNRAAQVVFSLDDLSTVQRYNTKLNNHERVTEYAESLGAEMVVARYFGLDYDINVSNGKRNADVGKGLEVKWTSYINGSLIIYPNDREDDVAVLVVGRSPEYYIVGWLPVKMAIQKHFKNSQQDSWWIGQDSLNPIEDLVRSNYASTHI
Ga0209500_100022854	F032154	AGG	MGEFEMINTSTGERLRIDQDGTELRDRVDPPAIEWCDRGQHFAPKYGGRDEYDILWICLECQK
Ga0209500_100022855	F015073	N/A	MSFLDNYETVNQKVIRLHATYPTNRIETSIIDWNSEKGYVLIECRIYRHYEDEKPAAIDYAHGMVGAYNVQMKRWYIEDTVSSAIGRCASVVLGVENKASKESMEQVEHMPKAFIEHDPWSKPIFEEGFTTAKTALDDIKATLGEAQASAAPICSHGHMIWRTGDKGGKAWGGYMCVEKNKANQCTPRWFVLASDGQWKPQV