NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209500_10002259

Scaffold Ga0209500_10002259


Overview

Basic Information
Taxon OID3300027782 Open in IMG/M
Scaffold IDGa0209500_10002259 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13881
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003182Metagenome / Metatranscriptome502Y
F009883Metagenome / Metatranscriptome311Y
F010982Metagenome296N
F012452Metagenome280Y
F032155Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0209500_1000225915F032155N/AVTVGEWTAVGGFVLAVLAAIYSSMRIIIKSVMSELSPNSGSSLKDQVSRIEARLDYLYTKLIEEK
Ga0209500_1000225916F009883GGAGMNELSIVIFMIIAGALWSLMAYSVGFKEGERKGYRKGRAISRHIAAGKKVAK
Ga0209500_1000225917F012452AGGTGGMGFLDNYEGNKERTDRWIKTFPEGRLEATIVNFDGERGSILVRAAAWRNQTETEPAGIDFAYGYLAAYNANMKRWFVEDTVTSALMRVMALVMGGTEKATRETMQQVETMSAKVATADPKQDYDYWTTKFGDVPSFKSADELSDAEKAQSLGGAIQEVTSQLGGEMLAEAPQCVHGHRIWREGVSAKTGKLWGNYSCVERKPKQCEPVWYVFTSRGKWEPQV
Ga0209500_1000225919F010982N/AMILVRLSREDEITAHATGLARESRYGSNPKFNGNKGNFHNGVVIHSEAAGAEMAVARYFGIDDFTPTVNTFKNEPDVDLNGLGLEVKQTSHKNGHLIITDDDRDTDIAVLVVGESPSYYVVGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRRSKYVNTGI
Ga0209500_1000225920F003182AGGAGMSILEFDCSICAKLYGKAKQRHGLKKGAELTEHEWFAQCLGCGAFGIKIVDDSKIDEVSL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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