Scaffold Ga0209500_10002163

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10002163
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14259
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F014128	Metagenome / Metatranscriptome	265	Y
F025688	Metagenome / Metatranscriptome	200	Y
F035227	Metagenome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_1000216322	F025688	N/A	MKFILNIDGSNAGGKFLENYVGQEVNIDSLYKDIDINSPPLATLRTSDGKQHSIQLIDIRFINEFIFIQCFAIQHDDKQGGKALLRLKPVCDLEKVINP
Ga0209500_100021636	F035227	N/A	VNDNSSNIHKAVNLITLTEKEIKKYCLVKIGELFKKDDCILLYDDQYVKIGDGNLLLKFKITKENSVYRKK
Ga0209500_100021637	F001732	N/A	MTAKLPIFIILVFLFTGCFSTIKPSKQIDDNQKIIAKEEKKVEATVVEIEKNDKGKKIQTSGLSIGIQHSLNQVTNAPVQVDTALKLNERVISIVGSPHIDETKRIKATVDLLNSALVEERKKGEELLTQRDELINKLQKEKSELNQKYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVHPAAGAAFSIFNMLGSSVISIVKALTPKAFEMCNFATKEKVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSELLKRFDKEMDSHEKDLIEEILKEQKWIK
Ga0209500_100021638	F003904	N/A	VDKITVNVLVLNIKKYLFFALLPTAILVILALSSLKDIEQGYARFRFGRDITLYLRKSTDLLTYLGSAYTTTSDKKFLNQFNEHLKEREKYFNEEIIINKMLTQEELKEFRKGLDISNDLAKDVENAAFEKMDNKAFFGDKYLDYKNKIYENINNFRTLINDSSENIIKNEAKLLNIYLYCLAGIVLTLVYLIKQENPTSTKSKPIKKKPIKKRKQ
Ga0209500_100021639	F014128	N/A	MDQLQKMGIQIGFLISGMFGAILMATKNNKTDAKSVILSLVGGMSAANFLTPVLVDTLNIVNIKHQNGVAFIAGFLGLKLVELVSEKFLEKVSHKSKPKKIIKRKKI