Scaffold Ga0209500_10002082

Overview

Basic Information

• Taxon OID: 3300027782
• Scaffold ID: Ga0209500_10002082
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14558
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (33.33%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013879	Metagenome / Metatranscriptome	267	N
F016253	Metagenome / Metatranscriptome	248	Y
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y
F031459	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209500_100020821	F001272	N/A	QASGLLQLIDIAVKAGGIQNAKVALPLVDLIVNAAQPKSE
Ga0209500_100020822	F031459	N/A	MQTDTNNSSGVGISLATAAAAGAVSFLPQLTQWFQLGAAILAFIAASIGLYKTFKK
Ga0209500_1000208225	F016253	AGGAG	MSDRIQSIIKGGTGAYSISKKEAGEIHKAAKKVKNYAVSYWARNRKNKEVK
Ga0209500_100020824	F017997	N/A	VNFIEQIVTALLKWLTGFVQKPPTVEDAKRDPDLKKKLLDRIAESNR
Ga0209500_100020826	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGVNVDRLLQESGSLLLKENTDRLLLTFGKMMPVVGRLLTYDGRQMRIVSAKRDGSGAYYALELGSKTK
Ga0209500_100020827	F013879	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLAQAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKEGKPGLYGADMRKAAGALRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNQALINLANQYGLPQENVAMHRGSSAYAFNAKAGFNPSSHVRMNIGLADNQVGTVEGIYSKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT
Ga0209500_100020828	F010835	AGGA	MNAVALRTERALVDWLAAEDWSASPIGTPTCLTSYGHGAFADQDLEDQMPSFPRIVVRASTAVPVHPLDRTCEVDVTATLQLSADDTSEAHMLAIVQVFENLLQYLYVDGNIAELNALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI
Ga0209500_100020829	F023575	N/A	MANSKGLALVYGAKGTITLWNQAGATPGIVLSGAISTIESYDVTHEADVEQIKNSSGEVVAQVSANERISLNVTFIPSGTTSAIAKTGSSLPNVNGYVVIAGADATTYGGVAINGDYVYSGGGSVKFTSSGKAMVTMTVTKYPSLAGSATVFDLAV